• APL@Voro-interactive visualisation and analysis of cell membrane simulations

Kern, Martin, Jaeger-Honz, Sabrina, Schreiber, Falk and Sommer, Bjorn ORCID: https://orcid.org/0000-0003-1514-9898, 2023, Journal Article, APL@Voro-interactive visualisation and analysis of cell membrane simulations Bioinformatics, 39 (2). pp. 1-3. ISSN 1367-4811

Abstract or Description:

Molecular dynamics (MD) simulations of cell membranes allow for a better understanding of complex processes such as changing membrane dynamics, lipid rafts and the incorporation/passing of macromolecules into/through membranes. To explore and understand cell membrane compositions, dynamics and processes, visual analytics can help to interpret MD simulation data. APL@Voro is a software for the interactive visualisation and analysis of cell membrane simulations. Here, we present the new APL@Voro, which has been continuously developed since its initial release in 2013. We discuss newly implemented algorithms, methodologies and features, such as the interactive comparison of related simulations and methods to assign lipids to either the upper or lower leaflet. The current open-source version of APL@Voro can be downloaded from http://aplvoro.com. [Abstract copyright: © The Author(s) 2023. Published by Oxford University Press.]

Official URL: https://academic.oup.com/bioinformatics/article/39...
Subjects: Creative Arts and Design > W200 Design studies
School or Centre: School of Design
Identification Number or DOI: https://doi.org/10.1093/bioinformatics/btad083
SWORD Depositor: Unnamed user with username publicationrouter
Date Deposited: 13 Mar 2023 13:57
Last Modified: 13 Mar 2023 13:57
URI: https://researchonline.rca.ac.uk/id/eprint/5286
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